diff options
Diffstat (limited to 'examples/sge')
| -rw-r--r-- | examples/sge/Makefile | 25 | ||||
| -rwxr-xr-x | examples/sge/job1.sh | 14 | ||||
| -rwxr-xr-x | examples/sge/job2.sh | 15 | ||||
| -rwxr-xr-x | examples/sge/job3.sh | 15 | ||||
| -rw-r--r-- | examples/sge/submit.sh | 10 |
5 files changed, 79 insertions, 0 deletions
diff --git a/examples/sge/Makefile b/examples/sge/Makefile new file mode 100644 index 0000000..e0baff6 --- /dev/null +++ b/examples/sge/Makefile @@ -0,0 +1,25 @@ +.PHONY: all +SHELL := /bin/bash + +FILES := a.txt b.txt c.txt d.txt +all: $(FILES) merged.txt 3.txt + +%.txt: + @echo "Generating: $@" + sleep 5 + echo $(basename $@) > $@ + +merged.txt: $(FILES) + cat $^ | sort > $@ + +1.txt: job1.sh + qsub $< + +2.txt: job2.sh 1.txt + qsub -hold_jid job1 $< + +3.txt: job3.sh 2.txt + qsub -hold_jid job2 $< + +clean: + rm -rf *.txt *.log diff --git a/examples/sge/job1.sh b/examples/sge/job1.sh new file mode 100755 index 0000000..4c72eb2 --- /dev/null +++ b/examples/sge/job1.sh @@ -0,0 +1,14 @@ +#!/usr/bin/env bash +#$ -S /bin/bash +#$ -N job1 +#$ -q all.q +#$ -cwd +#$ -l h_rt=01:00:00 +#$ -l h_rss=30720M,mem_free=30720M +#$ -j y +#$ -o job1.log + +export LANGUAGE=en_AU.UTF-8 + +sleep 10 +echo job1 > 1.txt diff --git a/examples/sge/job2.sh b/examples/sge/job2.sh new file mode 100755 index 0000000..fcd80d7 --- /dev/null +++ b/examples/sge/job2.sh @@ -0,0 +1,15 @@ +#!/usr/bin/env bash +#$ -S /bin/bash +#$ -N job2 +#$ -q all.q +#$ -cwd +#$ -l h_rt=01:00:00 +#$ -l h_rss=30720M,mem_free=30720M +#$ -j y +#$ -o job2.log + +export LANGUAGE=en_AU.UTF-8 + +sleep 10 +cat 1.txt > 2.txt +echo job2 >> 2.txt diff --git a/examples/sge/job3.sh b/examples/sge/job3.sh new file mode 100755 index 0000000..7243049 --- /dev/null +++ b/examples/sge/job3.sh @@ -0,0 +1,15 @@ +#!/usr/bin/env bash +#$ -S /bin/bash +#$ -N job3 +#$ -q all.q +#$ -cwd +#$ -l h_rt=01:00:00 +#$ -l h_rss=30720M,mem_free=30720M +#$ -j y +#$ -o job3.log + +export LANGUAGE=en_AU.UTF-8 + +sleep 10 +cat 2.txt > 3.txt +echo job3 >> 3.txt diff --git a/examples/sge/submit.sh b/examples/sge/submit.sh new file mode 100644 index 0000000..8adee71 --- /dev/null +++ b/examples/sge/submit.sh @@ -0,0 +1,10 @@ +#!/usr/bin/env bash +#$ -S /bin/bash +#$ -N make_job +#$ -q all.q +#$ -pe make 4 +#$ -cwd +#$ -j y +#$ -o make_job.log + +make -j $NSLOTS |